Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Pcar_1290 | Pcar_1291 | Pcar_1290 | Pcar_1291 | Hypothetical protein. | Protein of unknown function DUF523. | 0.742 |
Pcar_1290 | purM | Pcar_1290 | Pcar_1293 | Hypothetical protein. | Phosphoribosylformylglycinamidine cyclo-ligase. | 0.458 |
Pcar_1290 | purN | Pcar_1290 | Pcar_1292 | Hypothetical protein. | Phosphoribosylglycinamide formyltransferase, folate-dependent; Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate. | 0.553 |
Pcar_1290 | rpmB | Pcar_1290 | Pcar_1289 | Hypothetical protein. | Ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family. | 0.532 |
Pcar_1291 | Pcar_1290 | Pcar_1291 | Pcar_1290 | Protein of unknown function DUF523. | Hypothetical protein. | 0.742 |
Pcar_1291 | Pcar_2642 | Pcar_1291 | Pcar_2642 | Protein of unknown function DUF523. | Hypothetical protein. | 0.425 |
Pcar_1291 | Pcar_2712 | Pcar_1291 | Pcar_2712 | Protein of unknown function DUF523. | Protein of unknown function, DUF523 and DUF1722. | 0.536 |
Pcar_1291 | purM | Pcar_1291 | Pcar_1293 | Protein of unknown function DUF523. | Phosphoribosylformylglycinamidine cyclo-ligase. | 0.562 |
Pcar_1291 | purN | Pcar_1291 | Pcar_1292 | Protein of unknown function DUF523. | Phosphoribosylglycinamide formyltransferase, folate-dependent; Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate. | 0.650 |
Pcar_1291 | rpmB | Pcar_1291 | Pcar_1289 | Protein of unknown function DUF523. | Ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family. | 0.566 |
Pcar_2642 | Pcar_1291 | Pcar_2642 | Pcar_1291 | Hypothetical protein. | Protein of unknown function DUF523. | 0.425 |
Pcar_2712 | Pcar_1291 | Pcar_2712 | Pcar_1291 | Protein of unknown function, DUF523 and DUF1722. | Protein of unknown function DUF523. | 0.536 |
purM | Pcar_1290 | Pcar_1293 | Pcar_1290 | Phosphoribosylformylglycinamidine cyclo-ligase. | Hypothetical protein. | 0.458 |
purM | Pcar_1291 | Pcar_1293 | Pcar_1291 | Phosphoribosylformylglycinamidine cyclo-ligase. | Protein of unknown function DUF523. | 0.562 |
purM | purN | Pcar_1293 | Pcar_1292 | Phosphoribosylformylglycinamidine cyclo-ligase. | Phosphoribosylglycinamide formyltransferase, folate-dependent; Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate. | 0.999 |
purM | rpmB | Pcar_1293 | Pcar_1289 | Phosphoribosylformylglycinamidine cyclo-ligase. | Ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family. | 0.446 |
purN | Pcar_1290 | Pcar_1292 | Pcar_1290 | Phosphoribosylglycinamide formyltransferase, folate-dependent; Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate. | Hypothetical protein. | 0.553 |
purN | Pcar_1291 | Pcar_1292 | Pcar_1291 | Phosphoribosylglycinamide formyltransferase, folate-dependent; Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate. | Protein of unknown function DUF523. | 0.650 |
purN | purM | Pcar_1292 | Pcar_1293 | Phosphoribosylglycinamide formyltransferase, folate-dependent; Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate. | Phosphoribosylformylglycinamidine cyclo-ligase. | 0.999 |
purN | rpmB | Pcar_1292 | Pcar_1289 | Phosphoribosylglycinamide formyltransferase, folate-dependent; Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate. | Ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family. | 0.491 |
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