STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fimUType IV pilus minor pilin FimU. (190 aa)    
Predicted Functional Partners:
pilV
Type IV pilus minor pilin PilV.
 
  
 0.982
pilW
Type IV pilus minor pilin PilW.
 
  
 0.977
pilX
Type IV pilus minor pilin PilX.
 
  
 0.970
pilY1
Type IV pilus assembly protein PilY1.
 
  
 0.958
pilE
Type IV pilus minor pilin PilE.
 
  
 0.933
pilO
Type IV pilus biogenesis protein PilO.
 
  
 0.777
pilN
Type IV pilus biogenesis protein PilN.
 
  
 0.772
ribF
Riboflavin kinase and FAD synthetase; Belongs to the ribF family.
     
 0.720
Pcar_2052
Transglutaminase/protease-like domain membrane lipoprotein.
 
     0.670
pilM
Type IV pilus biogenesis ATPase PilM.
 
   
 0.635
Your Current Organism:
Pelobacter carbinolicus
NCBI taxonomy Id: 338963
Other names: P. carbinolicus DSM 2380, Pelobacter carbinolicus DSM 2380, Pelobacter carbinolicus Gra Bd 1, Pelobacter carbinolicus str. DSM 2380, Pelobacter carbinolicus strain DSM 2380
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.