Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Pcar_2309 | Pcar_2311 | Pcar_2309 | Pcar_2311 | Protein of unknown function DUF785. | Helix-turn-helix and zinc ribbon transcriptional regulator. | 0.424 |
Pcar_2309 | rimK | Pcar_2309 | Pcar_2310 | Protein of unknown function DUF785. | Ribosomal protein S6 C-glutamyltransferase RimK. | 0.995 |
Pcar_2311 | Pcar_2309 | Pcar_2311 | Pcar_2309 | Helix-turn-helix and zinc ribbon transcriptional regulator. | Protein of unknown function DUF785. | 0.424 |
Pcar_2311 | rimK | Pcar_2311 | Pcar_2310 | Helix-turn-helix and zinc ribbon transcriptional regulator. | Ribosomal protein S6 C-glutamyltransferase RimK. | 0.424 |
ddl | rimK | Pcar_2199 | Pcar_2310 | D-alanine--D-alanine ligase; Cell wall formation. | Ribosomal protein S6 C-glutamyltransferase RimK. | 0.452 |
msrA | rimK | Pcar_2611 | Pcar_2310 | Peptide methionine sulfoxide reductase MsrA; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine. | Ribosomal protein S6 C-glutamyltransferase RimK. | 0.434 |
rimK | Pcar_2309 | Pcar_2310 | Pcar_2309 | Ribosomal protein S6 C-glutamyltransferase RimK. | Protein of unknown function DUF785. | 0.995 |
rimK | Pcar_2311 | Pcar_2310 | Pcar_2311 | Ribosomal protein S6 C-glutamyltransferase RimK. | Helix-turn-helix and zinc ribbon transcriptional regulator. | 0.424 |
rimK | ddl | Pcar_2310 | Pcar_2199 | Ribosomal protein S6 C-glutamyltransferase RimK. | D-alanine--D-alanine ligase; Cell wall formation. | 0.452 |
rimK | msrA | Pcar_2310 | Pcar_2611 | Ribosomal protein S6 C-glutamyltransferase RimK. | Peptide methionine sulfoxide reductase MsrA; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine. | 0.434 |
rimK | rpsF | Pcar_2310 | Pcar_1999 | Ribosomal protein S6 C-glutamyltransferase RimK. | Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA. | 0.406 |
rpsF | rimK | Pcar_1999 | Pcar_2310 | Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA. | Ribosomal protein S6 C-glutamyltransferase RimK. | 0.406 |