STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pcar_2514Aldehyde:ferredoxin oxidoreductase, tungsten-containing. (628 aa)    
Predicted Functional Partners:
Pcar_2399
ABC transporter, periplasmic substrate-binding protein.
 
   
 0.729
tupA
Tungstate ABC transporter, periplasmic tungstate-binding protein.
 
   
 0.719
actB
Menaquinol oxidoreductase complex ACIII, molybdopterin-binding-like and iron-sulfur cluster-binding subunit ActB.
  
 
 0.703
cooF-2
Carbon monoxide dehydrogenase-associated iron-sulfur cluster-binding oxidoreductase CooF.
  
 
 0.673
tupB
Tungstate ABC transporter, membrane protein.
 
     0.673
Pcar_0674
Helix-turn-helix domain DNA-binding protein.
 
     0.643
cooF-1
Carbon monoxide dehydrogenase-associated iron-sulfur cluster-binding oxidoreductase CooF.
 
 
 
 0.537
moaD-3
Molybdopterin biosynthesis sulfur carrier protein.
 
     0.501
Pcar_3368
Hypothetical protein.
       0.501
thiS-3
Thiamin biosynthesis sulfur carrier protein.
       0.501
Your Current Organism:
Pelobacter carbinolicus
NCBI taxonomy Id: 338963
Other names: P. carbinolicus DSM 2380, Pelobacter carbinolicus DSM 2380, Pelobacter carbinolicus Gra Bd 1, Pelobacter carbinolicus str. DSM 2380, Pelobacter carbinolicus strain DSM 2380
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