STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pcar_2569ABC transporter, periplasmic substrate-binding protein. (348 aa)    
Predicted Functional Partners:
Pcar_2568
ABC transporter, periplasmic substrate-binding protein.
 
    
0.790
Pcar_2567
Sensor histidine kinase, HAMP domain-containing; Domains: HAMP, HisKA, HATPase_c.
       0.737
Pcar_2565
Response receiver sensor diguanylate cyclase/phosphodiesterase, PAS domain-containing; Domains: REC, PAS, GGDEF, EAL.
       0.642
Pcar_2566
Response regulator, putative; Domains: REC.
       0.629
Pcar_2564
Hypothetical protein.
       0.556
Pcar_2571
Hypothetical protein.
 
     0.486
Pcar_0424
Hypothetical protein.
  
     0.459
Pcar_0055
Hypothetical protein.
  
     0.449
Your Current Organism:
Pelobacter carbinolicus
NCBI taxonomy Id: 338963
Other names: P. carbinolicus DSM 2380, Pelobacter carbinolicus DSM 2380, Pelobacter carbinolicus Gra Bd 1, Pelobacter carbinolicus str. DSM 2380, Pelobacter carbinolicus strain DSM 2380
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.