Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Pcar_3003Periplasmic substrate-binding protein and efflux pump, RND family, outer membrane protein. (816 aa)    
Predicted Functional Partners:
Pcar_3002
Efflux pump, RND family, membrane fusion lipoprotein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 0.964
Pcar_0364
Efflux pump, RND family, outer membrane protein.
  
  
  0.923
Pcar_1015
Efflux pump, RND family, outer membrane protein.
  
  
  0.912
Pcar_3001
Efflux pump, RND family, inner membrane protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
 
 0.904
Pcar_0289
Efflux pump, RND family, outer membrane lipoprotein.
     
 0.903
Pcar_2912
Outer membrane channel, putative.
     
 0.903
Pcar_2126
Efflux pump, RND family, outer membrane protein.
     
 0.901
acrA
Efflux pump, RND family, membrane fusion lipoprotein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
 0.856
Pcar_2243
Efflux pump, RND family, membrane fusion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
 0.856
acrB
Efflux pump, RND family, inner membrane protein.
  
 0.839
Your Current Organism:
Pelobacter carbinolicus
NCBI taxonomy Id: 338963
Other names: P. carbinolicus DSM 2380, Pelobacter carbinolicus DSM 2380, Pelobacter carbinolicus Gra Bd 1, Pelobacter carbinolicus str. DSM 2380, Pelobacter carbinolicus strain DSM 2380
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.