STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pcar_3025Metal ABC transporter, ATP-binding protein. (257 aa)    
Predicted Functional Partners:
Pcar_3024
Metal ABC transporter, membrane protein.
 
 0.999
zntC
Metal ABC transporter, periplasmic metal-binding protein.
 
 
 0.999
ideR
Iron/manganese-dependent transcriptional regulator.
  
  
 0.608
Pcar_3027
Membrane protein, MarC family.
       0.526
fur
Ferric uptake regulation protein Fur; Belongs to the Fur family.
  
  
 0.467
fur-2
Transcriptional regulator, Fur family; Belongs to the Fur family.
  
  
 0.467
cheW44H
Scaffold protein CheW associated with MCPs of class 44H.
  
  
 0.436
Pcar_0146
NRAMP superfamily transporter.
  
  
 0.425
Your Current Organism:
Pelobacter carbinolicus
NCBI taxonomy Id: 338963
Other names: P. carbinolicus DSM 2380, Pelobacter carbinolicus DSM 2380, Pelobacter carbinolicus Gra Bd 1, Pelobacter carbinolicus str. DSM 2380, Pelobacter carbinolicus strain DSM 2380
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.