Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Pcar_3207Hypothetical protein. (56 aa)    
Predicted Functional Partners:
Pcar_0498
Sigma-54-dependent transcriptional response regulator; Domains: REC, sigma54 interaction.
       0.541
Pcar_0499
SH3 domain protein.
       0.505
Pcar_3208
Hypothetical protein.
       0.505
Pcar_3209
Hypothetical protein.
       0.505
Pcar_0496
Sensor histidine kinase, HAMP domain-containing; Domains: HAMP, HisKA, HATPase_c.
       0.476
Pcar_0497
Hypothetical protein.
       0.476
Pcar_0495
Radical SAM domain iron-sulfur cluster-binding oxidoreductase.
       0.416
Your Current Organism:
Pelobacter carbinolicus
NCBI taxonomy Id: 338963
Other names: P. carbinolicus DSM 2380, Pelobacter carbinolicus DSM 2380, Pelobacter carbinolicus Gra Bd 1, Pelobacter carbinolicus str. DSM 2380, Pelobacter carbinolicus strain DSM 2380
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