Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Ppro_0366KEGG: sdn:Sden_3000 hypothetical protein. (1289 aa)    
Predicted Functional Partners:
Ppro_0364
KEGG: sdn:Sden_2998 hypothetical protein.
 
 
 
 0.986
Ppro_0367
PFAM: GPW/gp25 family protein; KEGG: sdn:Sden_3001 gpW/GP25.
 
 
 0.985
Ppro_0370
KEGG: sdn:Sden_3004 hypothetical protein.
 
 
 0.977
Ppro_0369
TIGRFAM: Rhs element Vgr protein; KEGG: sdn:Sden_3003 rhs element Vgr protein.
 
 
   0.963
Ppro_0373
KEGG: sdn:Sden_3007 hypothetical protein.
 
 
 0.960
Ppro_0371
TIGRFAM: conserved hypothetical phage tail protein; KEGG: sdn:Sden_3005 hypothetical protein.
 
 
 
 0.957
Ppro_0365
KEGG: sdn:Sden_2999 hypothetical protein.
 
    0.955
Ppro_0372
TIGRFAM: conserved hypothetical phage tail protein; KEGG: sdn:Sden_3006 hypothetical protein.
 
 
 
 0.950
Ppro_1827
PFAM: phage tail sheath protein; KEGG: nha:Nham_0832 phage tail sheath protein.
 
 
 0.942
Ppro_0363
KEGG: sdn:Sden_2997 hypothetical protein.
 
     0.941
Your Current Organism:
Pelobacter propionicus
NCBI taxonomy Id: 338966
Other names: P. propionicus DSM 2379, Pelobacter propionicus DSM 2379, Pelobacter propionicus str. DSM 2379, Pelobacter propionicus strain DSM 2379
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