STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ppro_0407PFAM: alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain; KEGG: aba:Acid345_4079 alpha amylase. (492 aa)    
Predicted Functional Partners:
Ppro_1252
Amino acid/polyamine/organocation transporter, APC superfamily; PFAM: amino acid permease-associated region; KEGG: sru:SRU_2312 amino acid permease family protein; TC 2.A.3.
   
 0.921
Ppro_3260
Hypothetical protein.
   
 0.921
Ppro_0408
KEGG: reu:Reut_A1205 hypothetical protein.
 
     0.817
Ppro_3263
Trehalose synthase; KEGG: gsu:GSU2361 alpha amylase family protein; TIGRFAM: trehalose synthase; trehalose synthase-fused possible maltokinase; PFAM: alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain.
  
 
 0.803
Ppro_0406
KEGG: aba:Acid345_4080 hypothetical protein.
 
 
 
 0.801
glgA
Glycogen synthase (ADP-glucose); Synthesizes alpha-1,4-glucan chains using ADP-glucose.
  
 0.563
Ppro_0419
Isoamylase; KEGG: aba:Acid345_3295 glycogen debranching enzyme GlgX; TIGRFAM: glycogen debranching enzyme GlgX; PFAM: glycoside hydrolase, family 13 domain protein; alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain; Belongs to the glycosyl hydrolase 13 family.
 
  
 0.553
Ppro_3269
KEGG: gme:Gmet_3467 malto-oligosyltrehalose trehalohydrolase; TIGRFAM: malto-oligosyltrehalose trehalohydrolase; PFAM: glycoside hydrolase, family 13 domain protein; alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain.
 
  
 0.524
Ppro_0405
PFAM: protein of unknown function UPF0118; KEGG: sat:SYN_02943 hypothetical membrane protein.
       0.460
Ppro_0729
PFAM: glutamine amidotransferase, class-II; glutamate synthase, alpha subunit domain protein; ferredoxin-dependent glutamate synthase; KEGG: gme:Gmet_0147 ferredoxin-dependent glutamate synthase.
     
 0.459
Your Current Organism:
Pelobacter propionicus
NCBI taxonomy Id: 338966
Other names: P. propionicus DSM 2379, Pelobacter propionicus DSM 2379, Pelobacter propionicus str. DSM 2379, Pelobacter propionicus strain DSM 2379
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