STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ppro_0444KEGG: gme:Gmet_0022 hypothetical protein. (656 aa)    
Predicted Functional Partners:
secY
Protein translocase subunit secY/sec61 alpha; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently.
    
   0.746
Ppro_1588
KEGG: son:SO4144 cytochrome c, putative.
    
   0.746
Ppro_1722
KEGG: gme:Gmet_2402 hypothetical protein.
  
     0.619
Ppro_0051
KEGG: mag:amb0575 hypothetical protein.
  
     0.562
Ppro_0049
KEGG: noc:Noc_1940 hypothetical protein.
  
     0.521
Ppro_0443
Hypothetical protein.
  
    0.519
Ppro_1017
PFAM: phage integrase family protein; KEGG: pca:Pcar_0420 hypothetical protein; Belongs to the 'phage' integrase family.
  
     0.476
Ppro_2531
KEGG: pca:Pcar_2914 superfamily I DNA and RNA helicases-like.
  
     0.472
Ppro_2920
PFAM: Peptidoglycan-binding LysM; KEGG: gsu:GSU3276 LysM domain protein.
  
     0.444
Ppro_3384
KEGG: gme:Gmet_1341 hypothetical protein.
  
     0.435
Your Current Organism:
Pelobacter propionicus
NCBI taxonomy Id: 338966
Other names: P. propionicus DSM 2379, Pelobacter propionicus DSM 2379, Pelobacter propionicus str. DSM 2379, Pelobacter propionicus strain DSM 2379
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.