STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ppro_0484KEGG: gme:Gmet_0693 hypothetical protein. (251 aa)    
Predicted Functional Partners:
Ppro_3463
PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: gsu:GSU2799 radical SAM domain protein.
   
    0.926
Ppro_0487
TIGRFAM: ammonium transporter; PFAM: Rh family protein/ammonium transporter; KEGG: gsu:GSU0940 ammonium transporter; TC 1.A.11.
  
    0.791
Ppro_3468
Mo-nitrogenase MoFe protein subunit NifD precursor; KEGG: gsu:GSU2820 nitrogenase molybdenum-iron protein, alpha chain; TIGRFAM: nitrogenase molybdenum-iron protein alpha chain; nitrogenase component I, alpha chain; PFAM: oxidoreductase/nitrogenase, component 1; Belongs to the NifD/NifK/NifE/NifN family.
   
    0.701
Ppro_0486
TIGRFAM: ammonium transporter; PFAM: Rh family protein/ammonium transporter; KEGG: pca:Pcar_1022 ammonium transporter; TC 1.A.11.
  
    0.681
Ppro_0485
PFAM: nitrogen regulatory protein P-II; KEGG: gsu:GSU0939 nitrogen regulatory protein P-II, putative; Belongs to the P(II) protein family.
  
  
 0.657
Your Current Organism:
Pelobacter propionicus
NCBI taxonomy Id: 338966
Other names: P. propionicus DSM 2379, Pelobacter propionicus DSM 2379, Pelobacter propionicus str. DSM 2379, Pelobacter propionicus strain DSM 2379
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.