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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ppro_0530PFAM: Peptidoglycan-binding LysM; KEGG: gsu:GSU2551 LysM domain protein. (331 aa)    
Predicted Functional Partners:
Ppro_0994
PFAM: Pilus assembly protein, PilO; KEGG: gsu:GSU2030 type IV pilus biogenesis protein PilO.
  
     0.766
Ppro_0993
PFAM: Fimbrial assembly family protein; KEGG: gsu:GSU2031 type IV pilus biogenesis protein PilN.
  
     0.754
Ppro_0992
TIGRFAM: type IV pilus assembly protein PilM; KEGG: gsu:GSU2032 type IV pilus biogenesis protein PilM.
  
     0.751
cpoB
Lipoprotein, putative; Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division; Belongs to the CpoB family.
 
     0.707
Ppro_0996
TIGRFAM: type IV pilus secretin PilQ; PFAM: type II and III secretion system protein; NolW domain protein; Secretin/TonB, short N-terminal domain; KEGG: gme:Gmet_0975 type II and III secretion system protein:NolW-like:secretin/TonB, short-like.
  
     0.692
Ppro_0646
PFAM: Tetratricopeptide TPR_2 repeat protein; KEGG: gsu:GSU1698 TPR domain protein.
 
     0.651
Ppro_2834
KEGG: gsu:GSU0540 hypothetical protein.
  
     0.600
Ppro_0995
KEGG: gsu:GSU2029 putative type IV pilus assembly protein PilP.
  
     0.574
Ppro_0658
KEGG: gme:Gmet_1983 hypothetical protein.
  
     0.572
Ppro_0500
KEGG: gme:Gmet_0102 hypothetical protein.
  
     0.541
Your Current Organism:
Pelobacter propionicus
NCBI taxonomy Id: 338966
Other names: P. propionicus DSM 2379, Pelobacter propionicus DSM 2379, Pelobacter propionicus str. DSM 2379, Pelobacter propionicus strain DSM 2379
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