STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ppro_0764PFAM: regulatory protein, TetR; KEGG: gsu:GSU3060 transcriptional regulator, TetR family. (203 aa)    
Predicted Functional Partners:
Ppro_0765
TIGRFAM: squalene/oxidosqualene cyclases; squalene-hopene cyclase; PFAM: Prenyltransferase/squalene oxidase; KEGG: gsu:GSU3061 squalene-hopene cyclase.
       0.590
pth
peptidyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family.
   
    0.517
Ppro_3460
PFAM: transcriptional activator domain; KEGG: neu:NE1994 TPR repeat.
  
  
 0.515
Ppro_1991
Multi-sensor signal transduction histidine kinase; KEGG: gsu:GSU2444 sensor histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-3 domain protein; SMART: PAC repeat-containing protein; extracellular solute-binding protein, family 3.
    
 
 0.505
Ppro_3410
PAS sensor protein; KEGG: ret:RHE_PC00094 probable serine/threonine kinase protein with two-component sensor domain; TIGRFAM: PAS sensor protein; PFAM: protein kinase; GAF domain protein; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold domain protein; SMART: PAS domain containing protein; serine/threonine protein kinase.
  
 
 
 0.496
Ppro_3365
PFAM: AMP-dependent synthetase and ligase; phospholipid/glycerol acyltransferase; major facilitator superfamily MFS_1; KEGG: pca:Pcar_2776 2-acyl-glycerophospho-ethanolamine acyltransferase.
     
 0.467
Ppro_0762
PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: gme:Gmet_1153 hypothetical protein.
     
 0.430
Ppro_2236
PFAM: AAA ATPase, central domain protein; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: pca:Pcar_0437 MoxR-like ATPase.
  
    0.426
Ppro_0763
PFAM: AsmA family protein; KEGG: gsu:GSU0874 hypothetical protein.
       0.422
Ppro_3008
KEGG: gsu:GSU1529 sensory box histidine kinase/response regulator; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; GAF domain protein; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein.
    
 
 0.421
Your Current Organism:
Pelobacter propionicus
NCBI taxonomy Id: 338966
Other names: P. propionicus DSM 2379, Pelobacter propionicus DSM 2379, Pelobacter propionicus str. DSM 2379, Pelobacter propionicus strain DSM 2379
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