STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ppro_0803Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: rru:Rru_A1456 transcriptional regulator, AraC family. (311 aa)    
Predicted Functional Partners:
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.786
Ppro_2215
PFAM: regulatory protein, TetR; KEGG: gme:Gmet_0803 transcriptional regulator, TetR family.
  
   
 0.494
Ppro_3162
KEGG: ade:Adeh_1998 periplasmic sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, dimerisation and phosphoacceptor region; SMART: PAS domain containing protein.
  
   
 0.482
Ppro_0524
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; Cupin 2, conserved barrel domain protein; KEGG: gme:Gmet_3247 transcriptional regulator, XRE family.
 
 
 0.458
Ppro_3410
PAS sensor protein; KEGG: ret:RHE_PC00094 probable serine/threonine kinase protein with two-component sensor domain; TIGRFAM: PAS sensor protein; PFAM: protein kinase; GAF domain protein; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold domain protein; SMART: PAS domain containing protein; serine/threonine protein kinase.
    
 
 0.422
Ppro_0804
PFAM: Endoribonuclease L-PSP; KEGG: bth:BT2475 putative translation initiation inhibitor.
       0.415
Ppro_3365
PFAM: AMP-dependent synthetase and ligase; phospholipid/glycerol acyltransferase; major facilitator superfamily MFS_1; KEGG: pca:Pcar_2776 2-acyl-glycerophospho-ethanolamine acyltransferase.
  
  
 0.408
Ppro_3163
PFAM: regulatory protein, LuxR; response regulator receiver; KEGG: ade:Adeh_1997 two component transcriptional regulator, LuxR family.
  
  
 0.406
Your Current Organism:
Pelobacter propionicus
NCBI taxonomy Id: 338966
Other names: P. propionicus DSM 2379, Pelobacter propionicus DSM 2379, Pelobacter propionicus str. DSM 2379, Pelobacter propionicus strain DSM 2379
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.