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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ppro_0873Sigma54 specific transcriptional regulator, Fis family; PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; KEGG: gme:Gmet_3263 two component, sigma54 specific, transcriptional regulator, fis family. (236 aa)    
Predicted Functional Partners:
Ppro_0875
PFAM: sigma-54 factor, interaction domain-containing protein; KEGG: gme:Gmet_3263 two component, sigma54 specific, transcriptional regulator, fis family.
 
     0.976
Ppro_0872
PFAM: Lytic transglycosylase, catalytic; KEGG: gsu:GSU0301 lytic murein transglycosylase, putative.
  
    0.791
Ppro_0974
RNA polymerase, sigma 54 subunit, RpoN/SigL; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
   
 0.778
Ppro_3165
Signal transduction histidine kinase with CheB and CheR activity; PFAM: CheB methylesterase; MCP methyltransferase, CheR-type; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; KEGG: dvu:DVU0449 sensor/response regulator.
  
 
 0.678
Ppro_0874
PFAM: transposase, IS4 family protein; KEGG: eba:p2A202 transposase.
       0.533
Ppro_2358
PAS/PAC sensor hybrid histidine kinase; KEGG: dps:DP1025 similar to two-component system sensory/regulatory protein (Ntr family); TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAC repeat-containing protein.
  
 
 0.529
Ppro_3045
KEGG: gme:Gmet_1918 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; GAF domain protein; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein.
  
 
 0.499
Ppro_3078
Signal transduction histidine kinase, nitrogen specific, NtrB; KEGG: gsu:GSU1004 sensory box histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein.
 
 0.499
Ppro_0869
TIGRFAM: putative L-threonine-O-3-phosphate decarboxylase; PFAM: aminotransferase, class I and II; aminotransferase class-III; KEGG: gme:Gmet_0487 L-threonine-O-3-phosphate decarboxylase.
       0.496
cobD
Adenosylcobinamide-phosphate synthase; Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group.
       0.496
Your Current Organism:
Pelobacter propionicus
NCBI taxonomy Id: 338966
Other names: P. propionicus DSM 2379, Pelobacter propionicus DSM 2379, Pelobacter propionicus str. DSM 2379, Pelobacter propionicus strain DSM 2379
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