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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ppro_1001KEGG: vvy:VVA1544 hypothetical protein. (1870 aa)    
Predicted Functional Partners:
Ppro_2336
TIGRFAM: CRISPR-associated protein Cas2; KEGG: gsu:GSU1393 CRISPR-associated CT1978 family protein.
   
 
 0.853
Ppro_1002
SMART: HNH nuclease; KEGG: gsu:GSU1364 HNH endonuclease family protein.
       0.598
Ppro_1000
KEGG: gsu:GSU1359 helicase, putative.
       0.568
Ppro_1003
PFAM: NERD domain protein; KEGG: dra:DR1757 hypothetical protein.
       0.528
Ppro_1005
SMART: HNH nuclease; KEGG: eba:ebA343 hypothetical protein.
       0.522
Ppro_1004
PFAM: histidine triad (HIT) protein; KEGG: rfr:Rfer_1209 histidine triad (HIT) protein.
       0.504
ribBA
3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
   
  
 0.409
Your Current Organism:
Pelobacter propionicus
NCBI taxonomy Id: 338966
Other names: P. propionicus DSM 2379, Pelobacter propionicus DSM 2379, Pelobacter propionicus str. DSM 2379, Pelobacter propionicus strain DSM 2379
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