STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ppro_1114Plasmid maintenance system antidote protein, XRE family; PFAM: helix-turn-helix domain protein; KEGG: sat:SYN_01508 transcriptional regulator helix turn helix. (120 aa)    
Predicted Functional Partners:
Ppro_1113
KEGG: sat:SYN_03526 hypothetical cytosolic protein.
     
 0.787
Ppro_0263
PFAM: HipA domain protein; KEGG: gsu:GSU2399 hypothetical protein.
 
 
 0.543
Ppro_2381
KEGG: sat:SYN_02326 AAA-superfamily of ATPases protein.
  
     0.516
Ppro_2533
TIGRFAM: prevent-host-death family protein; KEGG: neu:NE1598 hypothetical protein.
  
     0.510
Ppro_2471
KEGG: gsu:GSU1981 hypothetical protein.
  
     0.482
Ppro_0945
KEGG: syf:Synpcc7942_0410 hypothetical protein.
  
     0.473
Ppro_2383
KEGG: son:SO0646 hypothetical protein.
  
     0.471
Ppro_1495
Putative PAS/PAC sensor protein; PFAM: LytTr DNA-binding region; PAS fold-4 domain protein; KEGG: gsu:GSU2099 sensory box protein, putative.
  
   
 0.450
Ppro_3070
PFAM: metal-dependent phosphohydrolase, HD sub domain; KEGG: gme:Gmet_2382 metal dependent phosphohydrolase.
  
     0.444
Ppro_0946
KEGG: cbu:CBU_2085 hypothetical protein.
  
     0.431
Your Current Organism:
Pelobacter propionicus
NCBI taxonomy Id: 338966
Other names: P. propionicus DSM 2379, Pelobacter propionicus DSM 2379, Pelobacter propionicus str. DSM 2379, Pelobacter propionicus strain DSM 2379
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.