STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ppro_1229PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: pca:Pcar_0579 carbon-nitrogen hydrolase family protein. (286 aa)    
Predicted Functional Partners:
Ppro_1230
PFAM: protein of unknown function DUF105; KEGG: mja:MJ1613 hypothetical protein.
 
     0.816
Ppro_0737
Agmatine deiminase; PFAM: Porphyromonas-type peptidyl-arginine deiminase; KEGG: gsu:GSU1028 peptidylarginine deiminase-related protein; Belongs to the agmatine deiminase family.
 
  
 0.702
Ppro_1228
PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: pca:Pcar_2397 outer membrane receptor for ferrienterochelin and colicins-like.
 
     0.537
Ppro_1231
PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: cte:CT0935 TonB-dependent receptor-related protein.
       0.493
Ppro_0729
PFAM: glutamine amidotransferase, class-II; glutamate synthase, alpha subunit domain protein; ferredoxin-dependent glutamate synthase; KEGG: gme:Gmet_0147 ferredoxin-dependent glutamate synthase.
 
   
 0.451
guaA
GMP synthase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP.
   
 
 0.448
Ppro_1227
Hypothetical protein.
       0.440
Ppro_1974
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; SMART: Rhodanese domain protein; KEGG: pca:Pcar_1579 pyridine nucleotide-disulfide oxidoreductase/rhodanese domain protein.
   
  
 0.418
birA
biotin--acetyl-CoA-carboxylase ligase; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family.
     
 0.414
Ppro_3101
PFAM: beta-ketoacyl synthase; acyl transferase domain protein; short-chain dehydrogenase/reductase SDR; KR; KEGG: son:SO1602 multi-domain beta-ketoacyl synthase.
     
 0.409
Your Current Organism:
Pelobacter propionicus
NCBI taxonomy Id: 338966
Other names: P. propionicus DSM 2379, Pelobacter propionicus DSM 2379, Pelobacter propionicus str. DSM 2379, Pelobacter propionicus strain DSM 2379
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