STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ppro_1386PFAM: Cupin 2, conserved barrel domain protein; KEGG: dps:DP0553 hypothetical protein. (116 aa)    
Predicted Functional Partners:
Ppro_1385
PFAM: peptidase M20; peptidase M42 family protein; KEGG: gme:Gmet_2294 peptidase M42.
       0.578
Ppro_1196
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR, HTH; UbiC transcription regulator-associated domain protein; KEGG: gsu:GSU0267 transcriptional regulator, GntR family.
  
    0.536
Ppro_1384
PFAM: protein of unknown function DUF81; KEGG: dvu:DVU2783 hypothetical protein.
   
   0.524
Ppro_2151
PFAM: Rubrerythrin; KEGG: dvu:DVU2398 hypothetical protein.
  
     0.411
Your Current Organism:
Pelobacter propionicus
NCBI taxonomy Id: 338966
Other names: P. propionicus DSM 2379, Pelobacter propionicus DSM 2379, Pelobacter propionicus str. DSM 2379, Pelobacter propionicus strain DSM 2379
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.