STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ppro_1409PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: ssp:SSP0078 hypothetical protein. (269 aa)    
Predicted Functional Partners:
Ppro_1407
PFAM: type IV pilus assembly PilZ.
  
     0.773
Ppro_0717
Histidine kinase; PFAM: GCN5-related N-acetyltransferase; ATP-binding region, ATPase domain protein domain protein; KEGG: pca:Pcar_1990 signal transduction histidine kinase regulating C4-dicarboxylate transport system-like.
  
     0.638
Ppro_1408
PFAM: GAF domain protein; metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; KEGG: pca:Pcar_2329 metal dependent phosphohydrolase.
  
     0.622
Ppro_3619
KEGG: gme:Gmet_3557 lipoprotein, putative.
  
     0.603
Ppro_3142
PFAM: Roadblock/LC7 family protein; KEGG: pca:Pcar_2475 hypothetical protein.
  
     0.590
Ppro_1410
PFAM: membrane protein involved in aromatic hydrocarbon degradation; KEGG: dde:Dde_0339 outer membrane protein, OMPP1/FadL/TodX family.
 
     0.562
Ppro_1531
PFAM: aspartate/glutamate/uridylate kinase; KEGG: pca:Pcar_2386 hypothetical protein.
  
 
   0.465
Ppro_2507
PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: pca:Pcar_1394 radical SAM domain protein.
 
     0.459
Ppro_1218
KEGG: pca:Pcar_0459 hypothetical protein.
 
     0.446
Ppro_1413
Methionine synthase (B12-dependent); PFAM: dihydropteroate synthase, DHPS; homocysteine S-methyltransferase; Methionine synthase, B12-binding module, cap domain protein; cobalamin B12-binding domain protein; KEGG: gme:Gmet_0549 homocysteine S-methyltransferase.
     
 0.422
Your Current Organism:
Pelobacter propionicus
NCBI taxonomy Id: 338966
Other names: P. propionicus DSM 2379, Pelobacter propionicus DSM 2379, Pelobacter propionicus str. DSM 2379, Pelobacter propionicus strain DSM 2379
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