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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ppro_1920PFAM: regulatory protein, TetR; KEGG: eba:ebA6247 transcriptional regulator, TetR family. (202 aa)    
Predicted Functional Partners:
Ppro_1917
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tbd:Tbd_1359 ABC transporter ATPase.
 
 
 
 0.952
Ppro_1918
PFAM: protein of unknown function DUF214; KEGG: tbd:Tbd_1360 ABC transporter permease protein.
 
   
 0.949
Ppro_1919
TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: eba:ebA6248 hypothetical protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
   
 0.949
Ppro_1916
KEGG: rme:Rmet_1260 hypothetical protein.
 
     0.924
Ppro_1915
TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: tbd:Tbd_1356 RND efflux system outer membrane lipoprotein NodT.
 
   
 0.903
Ppro_0147
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tbd:Tbd_1359 ABC transporter ATPase.
 
 
 
 0.797
Ppro_0146
PFAM: protein of unknown function DUF214; KEGG: tbd:Tbd_1360 ABC transporter permease protein.
 
   
 0.787
Ppro_0145
TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: tbd:Tbd_1361 RND efflux membrane protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
   
 0.784
Ppro_1913
PFAM: transposase Tn3 family protein; KEGG: sec:SC008 transposase.
 
     0.532
pth
peptidyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family.
   
    0.517
Your Current Organism:
Pelobacter propionicus
NCBI taxonomy Id: 338966
Other names: P. propionicus DSM 2379, Pelobacter propionicus DSM 2379, Pelobacter propionicus str. DSM 2379, Pelobacter propionicus strain DSM 2379
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