Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Ppro_2005PFAM: cytochrome c biogenesis protein, transmembrane region; KEGG: gme:Gmet_2451 cytochrome c biogenesis protein, transmembrane region. (243 aa)    
Predicted Functional Partners:
Ppro_2006
PFAM: Redoxin domain protein; Thioredoxin domain; KEGG: gme:Gmet_2452 thioredoxin family protein.
  
 0.955
Ppro_2004
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: gsu:GSU1323 hypothetical protein.
       0.774
Ppro_2007
Trans-hexaprenyltranstransferase; PFAM: Polyprenyl synthetase; KEGG: gme:Gmet_2455 polyprenyl synthetase; Belongs to the FPP/GGPP synthase family.
       0.659
Ppro_2587
PFAM: cytochrome c assembly protein; KEGG: gsu:GSU0614 cytochrome c biogenesis protein, CcmF/CcyK/CcsA family.
 
  
 0.643
Ppro_3378
PFAM: cytochrome c assembly protein; KEGG: gme:Gmet_3232 cytochrome c assembly protein.
 
  
 0.632
msrA
methionine-R-sulfoxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.
  
  
 0.573
Ppro_2003
KEGG: pca:Pcar_2854 signal transduction histidine kinase regulating C4-dicarboxylate transport system-like; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein.
  
    0.556
Ppro_2002
Two component, sigma54 specific, transcriptional regulator, Fis family; PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; SMART: AAA ATPase; KEGG: gsu:GSU1250 sigma-54 dependent DNA-binding response regulator.
       0.550
Ppro_0830
PFAM: zinc/iron permease; KEGG: dps:DP0096 GufA protein.
   
    0.531
Ppro_1960
PFAM: zinc/iron permease; KEGG: dar:Daro_1606 zinc transporter ZIP.
   
    0.531
Your Current Organism:
Pelobacter propionicus
NCBI taxonomy Id: 338966
Other names: P. propionicus DSM 2379, Pelobacter propionicus DSM 2379, Pelobacter propionicus str. DSM 2379, Pelobacter propionicus strain DSM 2379
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