Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
Ppro_2012Deoxyribodipyrimidine photo-lyase type II; KEGG: gsu:GSU2829 deoxyribodipyrimidine photolyase, putative; TIGRFAM: deoxyribodipyrimidine photolyase; PFAM: DNA photolyase, FAD-binding; DNA photolyase domain protein. (450 aa)    
Predicted Functional Partners:
Ppro_0119
PFAM: protein of unknown function DUF523; Protein of unknown function DUF1722; KEGG: gme:Gmet_2759 protein of unknown function DUF523.
 
  
 0.953
Ppro_2013
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: gme:Gmet_1236 binding-protein-dependent transport systems inner membrane component.
  
    0.777
Ppro_2014
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: gsu:GSU1434 peptide ABC transporter, permease protein.
       0.774
Ppro_0842
PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: gme:Gmet_0521 protein tyrosine phosphatase.
    
   0.549
ybeY
Protein of unknown function UPF0054; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.
    
   0.549
Ppro_1977
KEGG: pca:Pcar_2857 hypothetical protein.
  
 
   0.522
guaB
Inosine-5'-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family.
  
 
 0.519
guaA
GMP synthase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP.
       0.466
msrA
methionine-R-sulfoxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.
     
 0.450
Ppro_0124
PFAM: SOUL heme-binding protein; KEGG: ccr:CC2549 hypothetical protein.
 
     0.425
Your Current Organism:
Pelobacter propionicus
NCBI taxonomy Id: 338966
Other names: P. propionicus DSM 2379, Pelobacter propionicus DSM 2379, Pelobacter propionicus str. DSM 2379, Pelobacter propionicus strain DSM 2379
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