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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ppro_2015Aminotransferase, class V; Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. (391 aa)    
Predicted Functional Partners:
Ppro_2016
Fe-S cluster assembly protein NifU; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins.
 
 0.999
Ppro_1928
PFAM: nitrogen-fixing NifU domain protein; KEGG: gsu:GSU1409 NifU-like domain protein.
 
 0.998
Ppro_1947
PFAM: nitrogen-fixing NifU domain protein; KEGG: mta:Moth_1416 nitrogen-fixing NifU-like.
 
 0.998
Ppro_0890
PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: gme:Gmet_1043 UBA/ThiF-type NAD/FAD binding fold:MoeZ/MoeB.
   
 0.952
Ppro_1708
KEGG: dps:DP0968 hypothetical protein; Belongs to the sulfur carrier protein TusA family.
   
 
 0.889
Ppro_2732
TIGRFAM: putative transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: pca:Pcar_1730 Rrf2 family protein.
 
  
 0.885
Ppro_1168
TIGRFAM: putative transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: gme:Gmet_1931 transcriptional regulator, BadM/Rrf2 family.
  
  
 0.862
selD
Selenophosphate synthase; Synthesizes selenophosphate from selenide and ATP.
    
 0.856
Ppro_3101
PFAM: beta-ketoacyl synthase; acyl transferase domain protein; short-chain dehydrogenase/reductase SDR; KR; KEGG: son:SO1602 multi-domain beta-ketoacyl synthase.
   
 
 0.827
Ppro_2319
KEGG: gme:Gmet_0489 hypothetical protein.
  
 
 0.815
Your Current Organism:
Pelobacter propionicus
NCBI taxonomy Id: 338966
Other names: P. propionicus DSM 2379, Pelobacter propionicus DSM 2379, Pelobacter propionicus str. DSM 2379, Pelobacter propionicus strain DSM 2379
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