STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ppro_2016Fe-S cluster assembly protein NifU; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins. (290 aa)    
Predicted Functional Partners:
Ppro_2015
Aminotransferase, class V; Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine.
 
 0.999
Ppro_2319
KEGG: gme:Gmet_0489 hypothetical protein.
  
 
 0.990
Ppro_2495
TIGRFAM: cysteine desulfurase family protein; PFAM: aminotransferase, class V; KEGG: gme:Gmet_1300 cysteine desulphurase related, unknown function.
  
 
 0.969
Ppro_3505
PFAM: Rubrerythrin; Rubredoxin-type Fe(Cys)4 protein; KEGG: dsy:DSY3407 hypothetical protein.
  
 
 0.914
Ppro_0157
PFAM: Heat shock protein 70; KEGG: cdi:DIP2120 chaperone protein DnaK.
  
 
 0.911
dnaK
Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
  
 
 0.911
Ppro_2145
KEGG: ade:Adeh_2261 molecular chaperone-like.
  
 
 0.911
Ppro_2481
Succinate dehydrogenase subunit B; PFAM: ferredoxin; 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: gme:Gmet_2395 succinate dehydrogenase.
  
 
 0.902
Ppro_0298
PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; thiamine pyrophosphate enzyme domain protein TPP-binding; KEGG: gsu:GSU0097 pyruvate ferredoxin/flavodoxin oxidoreductase.
  
  
 0.898
Ppro_0090
PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: gme:Gmet_3171 rubredoxin-type Fe(Cys)4 protein.
  
 
 0.895
Your Current Organism:
Pelobacter propionicus
NCBI taxonomy Id: 338966
Other names: P. propionicus DSM 2379, Pelobacter propionicus DSM 2379, Pelobacter propionicus str. DSM 2379, Pelobacter propionicus strain DSM 2379
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