STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ppro_2032PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: gme:Gmet_2695 glycerate dehydrogenase. (331 aa)    
Predicted Functional Partners:
Ppro_2915
PFAM: glycerate kinase; KEGG: sth:STH2490 glycerate kinase; Belongs to the glycerate kinase type-1 family.
 
  
 0.930
Ppro_2197
2-hydroxy-3-oxopropionate reductase; PFAM: 6-phosphogluconate dehydrogenase, NAD-binding; KEGG: gsu:GSU1372 3-hydroxyisobutyrate dehydrogenase family protein.
 
  
 0.921
Ppro_2540
PFAM: FAD linked oxidase domain protein; KEGG: dsy:DSY3357 hypothetical protein.
   
 0.920
Ppro_3253
PFAM: FAD linked oxidase domain protein; KEGG: gsu:GSU3296 glycolate oxidase subunit GlcD, putative.
   
 0.920
Ppro_1810
PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: mmp:MMP0870 glycerate dehydrogenase.
  
  
 
0.912
Ppro_0525
PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; protein of unknown function DUF224, cysteine-rich region domain protein; KEGG: gsu:GSU3297 iron-sulfur cluster-binding protein.
    
 0.905
Ppro_2541
PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; protein of unknown function DUF224, cysteine-rich region domain protein; KEGG: dsy:DSY3356 hypothetical protein.
    
 0.905
Ppro_2951
PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: cac:CAC2945 possible phosphoglycerate dehydrogenase.
  
  
 
0.904
Ppro_1187
Phosphoglycolate phosphatase; KEGG: gme:Gmet_2290 HAD-superfamily hydrolase subfamily IA; TIGRFAM: phosphoglycolate phosphatase; HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase.
    
  0.902
Ppro_2933
TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: gme:Gmet_0937 HAD-superfamily hydrolase, subfamily IA, variant 1.
    
  0.902
Your Current Organism:
Pelobacter propionicus
NCBI taxonomy Id: 338966
Other names: P. propionicus DSM 2379, Pelobacter propionicus DSM 2379, Pelobacter propionicus str. DSM 2379, Pelobacter propionicus strain DSM 2379
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