STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ppro_2139PFAM: periplasmic solute binding protein; KEGG: gme:Gmet_0491 periplasmic solute binding protein; Belongs to the bacterial solute-binding protein 9 family. (333 aa)    
Predicted Functional Partners:
Ppro_2137
PFAM: ABC-3 protein; KEGG: gme:Gmet_0493 ABC-3.
 
 0.999
Ppro_2138
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: gme:Gmet_0492 ABC transporter-related protein.
 
 
 0.999
Ppro_2140
Hypothetical protein.
       0.773
rpsZ
SSU ribosomal protein S14P; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site.
  
  
 0.734
rpmB
PFAM: ribosomal protein L28; KEGG: gsu:GSU2234 ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.
  
  
 0.733
Ppro_0775
PFAM: iron dependent repressor; FeoA family protein; KEGG: gsu:GSU1382 iron-dependent repressor, putative.
  
  
 0.643
Ppro_2141
PFAM: protein of unknown function UPF0005; KEGG: pca:Pcar_0302 hypothetical protein; Belongs to the BI1 family.
       0.565
Ppro_1157
PFAM: natural resistance-associated macrophage protein; KEGG: sat:SYN_01528 nramp family metal ion transport protein.
  
  
 0.478
purL
Phosphoribosylformylglycinamidine synthase subunit II; Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP- dependent manner. PurS interacts with PurQ and PurL and is thought to [...]
 
   
 0.457
Ppro_2639
PFAM: NLP/P60 protein; Peptidoglycan-binding LysM; KEGG: gme:Gmet_1169 NLP/P60:peptidoglycan-binding LysM.
 
  
 0.432
Your Current Organism:
Pelobacter propionicus
NCBI taxonomy Id: 338966
Other names: P. propionicus DSM 2379, Pelobacter propionicus DSM 2379, Pelobacter propionicus str. DSM 2379, Pelobacter propionicus strain DSM 2379
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