STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ppro_2153Competence protein; KEGG: aba:Acid345_1177 methylation. (148 aa)    
Predicted Functional Partners:
Ppro_2414
KEGG: gsu:GSU1777 general secretion pathway protein G.
 
 
 0.976
Ppro_0823
KEGG: pca:Pcar_0876 general secretion pathway protein G.
  
 
 0.971
Ppro_2413
PFAM: type II secretion system protein G; KEGG: gme:Gmet_1857 N-terminal methylation.
  
  
  0.965
Ppro_2512
PFAM: type II secretion system protein; KEGG: gsu:GSU1493 type IV pilus biogenesis protein PilC.
 
  
 0.849
Ppro_2421
PFAM: type II secretion system protein; KEGG: gsu:GSU1784 type IV pilus biogenesis protein PilC, putative.
 
  
 0.833
Ppro_1379
TIGRFAM: DNA internalization-related competence protein ComEC/Rec2; PFAM: beta-lactamase domain protein; ComEC/Rec2-related protein; KEGG: gsu:GSU1657 DNA internalization-related competence protein ComEC/Rec2.
   
  
 0.829
Ppro_0816
PFAM: type II secretion system protein; KEGG: ttj:TTHA0794 pilus assembly protein PilC.
 
  
 0.822
Ppro_1415
KEGG: gsu:GSU2917 hypothetical protein.
 
  
 0.792
Ppro_2420
PFAM: type II secretion system protein E; General secretory system II, protein E domain protein; KEGG: gme:Gmet_1864 type II secretion system protein E.
 
  
 0.784
Ppro_2514
TIGRFAM: type IV-A pilus assembly ATPase PilB; PFAM: type II secretion system protein E; General secretory system II, protein E domain protein; KEGG: gme:Gmet_1393 type II secretion system protein E.
 
  
 0.784
Your Current Organism:
Pelobacter propionicus
NCBI taxonomy Id: 338966
Other names: P. propionicus DSM 2379, Pelobacter propionicus DSM 2379, Pelobacter propionicus str. DSM 2379, Pelobacter propionicus strain DSM 2379
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