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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ppro_2169KEGG: mbu:Mbur_0719 hypothetical protein. (360 aa)    
Predicted Functional Partners:
Ppro_2865
KEGG: pfu:PF0797 hypothetical protein.
  
     0.764
Ppro_2873
KEGG: pfu:PF0797 hypothetical protein.
 
     0.764
Ppro_2168
KEGG: pca:Pcar_0630 ATP-grasp enzyme-like.
       0.631
Ppro_2468
KEGG: nmu:Nmul_A2522 glycosyl transferase, group 1.
 
     0.591
Ppro_2470
PFAM: polysaccharide deacetylase; KEGG: dvu:DVUA0043 polysaccharide deacetylase family protein.
 
     0.578
Ppro_2455
PFAM: O-antigen polymerase; KEGG: noc:Noc_1955 O-antigen polymerase.
 
   
 0.445
Ppro_2166
PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: pca:Pcar_0629 D-3-phosphoglycerate dehydrogenase.
       0.412
Ppro_2167
2,3-dimethylmalate lyase; TIGRFAM: phosphoenolpyruvate phosphomutase; KEGG: pca:Pcar_0628 phosphoenolpyruvate phosphomutase.
       0.412
Your Current Organism:
Pelobacter propionicus
NCBI taxonomy Id: 338966
Other names: P. propionicus DSM 2379, Pelobacter propionicus DSM 2379, Pelobacter propionicus str. DSM 2379, Pelobacter propionicus strain DSM 2379
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