STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ppro_2175PFAM: peptidase C39, bacteriocin processing; KEGG: cps:CPS_3210 peptidase, C39 family. (237 aa)    
Predicted Functional Partners:
Ppro_2173
KEGG: eba:ebA4694 hypothetical protein.
 
 
   0.821
Ppro_2174
KEGG: rso:RSc0446 probable lipoprotein.
       0.805
Ppro_2176
KEGG: neu:NE0788 hypothetical protein.
       0.769
Ppro_3424
TIGRFAM: flagellar basal-body rod protein FlgC; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: gme:Gmet_3114 flagellar basal-body rod protein FlgC; Belongs to the flagella basal body rod proteins family.
    
   0.703
Ppro_2177
KEGG: ddi:DDB0189729 hypothetical protein.
 
     0.665
Your Current Organism:
Pelobacter propionicus
NCBI taxonomy Id: 338966
Other names: P. propionicus DSM 2379, Pelobacter propionicus DSM 2379, Pelobacter propionicus str. DSM 2379, Pelobacter propionicus strain DSM 2379
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.