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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ppro_2279KEGG: dsy:DSY1299 hypothetical protein. (231 aa)    
Predicted Functional Partners:
Ppro_2534
KEGG: gsu:GSU1375 hypothetical protein.
  
     0.646
Ppro_0458
PFAM: Integrase, catalytic region; KEGG: rme:Rmet_6335 integrase, catalytic region.
  
     0.636
Ppro_0942
PFAM: Integrase, catalytic region; KEGG: rme:Rmet_6335 integrase, catalytic region.
  
     0.636
Ppro_1322
PFAM: Integrase, catalytic region; KEGG: rme:Rmet_6335 integrase, catalytic region.
  
     0.636
Ppro_1330
PFAM: Integrase, catalytic region; KEGG: rme:Rmet_6335 integrase, catalytic region.
  
     0.636
Ppro_2125
PFAM: Integrase, catalytic region; KEGG: rme:Rmet_6335 integrase, catalytic region.
  
     0.636
Ppro_2273
PFAM: Integrase, catalytic region; KEGG: rme:Rmet_6335 integrase, catalytic region.
  
     0.636
Ppro_2853
PFAM: Integrase, catalytic region; KEGG: bxe:Bxe_C0710 putative integrase.
  
     0.634
Ppro_1169
PFAM: Peptidoglycan-binding LysM; KEGG: neu:NE2076 LysM motif.
  
     0.463
Ppro_0867
KEGG: gme:Gmet_0679 cytochrome c family protein.
  
     0.422
Your Current Organism:
Pelobacter propionicus
NCBI taxonomy Id: 338966
Other names: P. propionicus DSM 2379, Pelobacter propionicus DSM 2379, Pelobacter propionicus str. DSM 2379, Pelobacter propionicus strain DSM 2379
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