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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ppro_2287PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: bps:BPSL1137 hypothetical protein. (366 aa)    
Predicted Functional Partners:
Ppro_0584
Chromosome segregation DNA-binding protein; TIGRFAM: parB-like partition proteins; PFAM: ParB domain protein nuclease; KEGG: gme:Gmet_3412 ParB-like partition protein; Belongs to the ParB family.
 
 
 0.945
Ppro_2286
PFAM: RelA/SpoT domain protein; KEGG: hypothetical protein.
       0.773
Ppro_2288
KEGG: mag:amb2044 type II restriction enzyme.
       0.732
Ppro_2289
KEGG: pol:Bpro_5024 ATPase-like protein.
       0.703
Ppro_2285
PFAM: filamentation induced by cAMP protein Fic; KEGG: gka:GK0752 huntingtin interacting protein E-like protein.
       0.659
Ppro_2290
KEGG: mag:amb2039 hypothetical protein.
       0.634
Ppro_2291
KEGG: eba:ebA5220 hypothetical protein.
       0.634
Ppro_2284
PFAM: PglZ domain; KEGG: eba:ebA5249 hypothetical protein.
       0.600
Ppro_2283
KEGG: mag:amb2047 predicted ATP-dependent Lon-type protease.
       0.574
birA
biotin--acetyl-CoA-carboxylase ligase; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family.
     
 0.502
Your Current Organism:
Pelobacter propionicus
NCBI taxonomy Id: 338966
Other names: P. propionicus DSM 2379, Pelobacter propionicus DSM 2379, Pelobacter propionicus str. DSM 2379, Pelobacter propionicus strain DSM 2379
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