STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ppro_2587PFAM: cytochrome c assembly protein; KEGG: gsu:GSU0614 cytochrome c biogenesis protein, CcmF/CcyK/CcsA family. (284 aa)    
Predicted Functional Partners:
Ppro_2588
PFAM: ResB family protein; KEGG: gsu:GSU0613 ResB-like family protein.
 
  
 0.984
Ppro_3374
TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; Uroporphyrinogen III synthase HEM4; KEGG: gsu:GSU3286 uroporphyrinogen III synthase/methyltransferase.
  
    0.894
Ppro_1255
KEGG: pca:Pcar_0193 hypothetical protein.
  
  
 0.727
Ppro_2005
PFAM: cytochrome c biogenesis protein, transmembrane region; KEGG: gme:Gmet_2451 cytochrome c biogenesis protein, transmembrane region.
 
  
 0.591
Ppro_0151
PFAM: cytochrome c biogenesis protein, transmembrane region; KEGG: gsu:GSU2958 thiol:disulfide interchange protein, putative.
 
  
 0.590
Ppro_2586
KEGG: gsu:GSU0621 hypothetical protein.
  
    0.550
hemA
glutamyl-tRNA reductase; Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA).
 
  
 0.526
purE
5-(carboxyamino)imidazole ribonucleotide mutase; Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR).
     
 0.470
Ppro_0150
PFAM: Thioredoxin domain; KEGG: gsu:GSU2957 thioredoxin family protein.
  
  
 0.442
Ppro_0197
PFAM: glutaredoxin 2; KEGG: gsu:GSU2124 thioredoxin-related domain protein.
  
  
 0.442
Your Current Organism:
Pelobacter propionicus
NCBI taxonomy Id: 338966
Other names: P. propionicus DSM 2379, Pelobacter propionicus DSM 2379, Pelobacter propionicus str. DSM 2379, Pelobacter propionicus strain DSM 2379
Server load: medium (48%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.