STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ppro_2888TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: gsu:GSU0184 HAD-superfamily hydrolase, subfamily IA, variant 1. (215 aa)    
Predicted Functional Partners:
Ppro_2657
KEGG: gme:Gmet_1232 hypothetical protein.
  
    0.753
Ppro_2887
TIGRFAM: C_GCAxxG_C_C family protein; KEGG: dsy:DSY2619 hypothetical protein.
  
    0.494
Ppro_3263
Trehalose synthase; KEGG: gsu:GSU2361 alpha amylase family protein; TIGRFAM: trehalose synthase; trehalose synthase-fused possible maltokinase; PFAM: alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain.
  
  
 0.467
Ppro_1449
Transcriptional regulator, DeoR family; PFAM: regulatory protein, DeoR; Helix-turn-helix, type 11 domain protein; KEGG: pca:Pcar_0940 transcriptional regulator, DeoR family.
 
    0.465
Ppro_0283
PFAM: methylenetetrahydrofolate reductase; homocysteine S-methyltransferase; KEGG: gme:Gmet_0504 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein.
 
    0.400
Your Current Organism:
Pelobacter propionicus
NCBI taxonomy Id: 338966
Other names: P. propionicus DSM 2379, Pelobacter propionicus DSM 2379, Pelobacter propionicus str. DSM 2379, Pelobacter propionicus strain DSM 2379
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.