STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ppro_2983KEGG: pcu:pc0812 hypothetical protein. (420 aa)    
Predicted Functional Partners:
Ppro_2982
KEGG: sat:SYN_00385 hypothetical protein.
       0.773
Ppro_2984
PFAM: NUDIX hydrolase; KEGG: gme:Gmet_1790 NUDIX hydrolase; Belongs to the Nudix hydrolase family.
  
    0.745
Ppro_2985
TIGRFAM: signal peptide peptidase SppA, 36K type; PFAM: peptidase S49; KEGG: gsu:GSU0820 signal peptide peptidase SppA, 36K type.
  
    0.540
Ppro_0854
PFAM: cytochrome c biogenesis protein, transmembrane region; KEGG: gsu:GSU2958 thiol:disulfide interchange protein, putative.
  
 
 0.496
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
     
 0.456
Your Current Organism:
Pelobacter propionicus
NCBI taxonomy Id: 338966
Other names: P. propionicus DSM 2379, Pelobacter propionicus DSM 2379, Pelobacter propionicus str. DSM 2379, Pelobacter propionicus strain DSM 2379
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.