STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ppro_2990KEGG: pfl:PFL_3798 chinitase domain protein. (286 aa)    
Predicted Functional Partners:
Ppro_0367
PFAM: GPW/gp25 family protein; KEGG: sdn:Sden_3001 gpW/GP25.
  
    0.670
Ppro_1815
KEGG: sma:SAV393 hypothetical protein.
  
    0.670
Ppro_0369
TIGRFAM: Rhs element Vgr protein; KEGG: sdn:Sden_3003 rhs element Vgr protein.
  
  
 0.600
Ppro_1818
KEGG: gme:Gmet_1137 hypothetical protein.
  
  
 0.600
Ppro_0049
KEGG: noc:Noc_1940 hypothetical protein.
  
     0.537
Ppro_0053
PFAM: phage Tail Collar domain protein; KEGG: pfo:Pfl_0155 phage tail collar.
 
  
 0.481
Ppro_2920
PFAM: Peptidoglycan-binding LysM; KEGG: gsu:GSU3276 LysM domain protein.
  
     0.445
Ppro_0373
KEGG: sdn:Sden_3007 hypothetical protein.
  
    0.419
Ppro_0374
KEGG: sdn:Sden_3008 hypothetical protein.
  
    0.419
Ppro_1827
PFAM: phage tail sheath protein; KEGG: nha:Nham_0832 phage tail sheath protein.
  
    0.419
Your Current Organism:
Pelobacter propionicus
NCBI taxonomy Id: 338966
Other names: P. propionicus DSM 2379, Pelobacter propionicus DSM 2379, Pelobacter propionicus str. DSM 2379, Pelobacter propionicus strain DSM 2379
Server load: medium (48%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.