STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ppro_3070PFAM: metal-dependent phosphohydrolase, HD sub domain; KEGG: gme:Gmet_2382 metal dependent phosphohydrolase. (264 aa)    
Predicted Functional Partners:
Ppro_3069
KEGG: gsu:GSU2433 ATP-dependent protease, putative.
       0.596
ligA
DNA ligase, NAD-dependent; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA.
       0.565
Ppro_0024
TIGRFAM: MJ0042 family finger-like protein; KEGG: gme:Gmet_1032 zinc finger/thioredoxin putative.
  
     0.552
Ppro_3072
Hypothetical protein.
       0.549
Ppro_3068
TIGRFAM: hemerythrin-like metal-binding protein; PFAM: Hemerythrin HHE cation binding domain protein; KEGG: gme:Gmet_0834 hemerythrin-like, metal-binding protein.
       0.547
Ppro_3073
KEGG: bxe:Bxe_A3090 hypothetical protein.
       0.500
Ppro_3124
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; KEGG: sat:SYN_01508 transcriptional regulator helix turn helix.
  
     0.479
Ppro_3299
KEGG: gsu:GSU3079 hypothetical protein.
  
     0.463
Ppro_2008
KEGG: gsu:GSU1638 hypothetical protein.
  
 
   0.460
Ppro_0520
KEGG: gsu:GSU3306 hypothetical protein.
  
     0.450
Your Current Organism:
Pelobacter propionicus
NCBI taxonomy Id: 338966
Other names: P. propionicus DSM 2379, Pelobacter propionicus DSM 2379, Pelobacter propionicus str. DSM 2379, Pelobacter propionicus strain DSM 2379
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.