STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ppro_3151Diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: rme:Rmet_5660 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s). (100 aa)    
Predicted Functional Partners:
Ppro_2675
TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; CBS domain containing protein; EAL domain protein; PAS fold-4 domain protein; PAS fold domain protein; KEGG: gsu:GSU0946 sensory box/GGDEF family protein.
 
 
 0.869
Ppro_0429
Diguanylate cyclase with PAS/PAC sensor; KEGG: sth:STH3108 hypothetical protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAC repeat-containing protein.
  
 
   0.777
Ppro_2683
Diguanylate cyclase with PAS/PAC sensor; KEGG: chy:CHY_0880 response regulator/sensory box protein/GGDEF domain protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; histidine kinase, HAMP region domain protein; PAS fold domain protein; SMART: PAS domain containing protein.
  
   0.776
Ppro_0795
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; FeoA family protein; KEGG: ppu:PP1411 GGDEF domain protein.
  
   0.775
Ppro_3369
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: mca:MCA0456 GGDEF family protein.
  
     0.768
Ppro_0542
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: ana:alr3504 unknown protein.
  
     0.759
Ppro_3261
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: ana:alr3504 unknown protein.
  
     0.758
Ppro_1834
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: xcv:XCV0672 putative signal transduction protein.
  
     0.757
Ppro_0884
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: ava:Ava_3234 putative diguanylate cyclase (GGDEF domain).
  
     0.752
Ppro_3362
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: bmb:BruAb2_0614 response regulator/GGDEF domain protein.
  
     0.751
Your Current Organism:
Pelobacter propionicus
NCBI taxonomy Id: 338966
Other names: P. propionicus DSM 2379, Pelobacter propionicus DSM 2379, Pelobacter propionicus str. DSM 2379, Pelobacter propionicus strain DSM 2379
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