STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ppro_3208PFAM: protein of unknown function DUF140; KEGG: gsu:GSU0924 ABC transporter, permease protein, putative. (256 aa)    
Predicted Functional Partners:
Ppro_3213
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: gme:Gmet_2542 ABC transporter-related protein.
 0.997
Ppro_0561
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: gsu:GSU0816 ABC transporter, ATP-binding protein.
 0.996
Ppro_0560
PFAM: Mammalian cell entry related domain protein; KEGG: gme:Gmet_0786 mammalian cell entry-related protein.
 
 0.993
Ppro_3214
PFAM: Mammalian cell entry related domain protein; KEGG: gme:Gmet_2541 mammalian cell entry-related protein.
 
 0.986
Ppro_0562
PFAM: protein of unknown function DUF140; KEGG: gsu:GSU0817 putative ABC transport system permease protein.
  
  
 
0.912
Ppro_0558
PFAM: toluene tolerance family protein; KEGG: gme:Gmet_0784 toluene tolerance.
  
 
 0.859
lon-2
ATP-dependent protease La; ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short- lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner.
       0.773
Ppro_1526
Anti-sigma-factor antagonist; TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: sat:SYN_02356 anti-sigma F factor antagonist; Belongs to the anti-sigma-factor antagonist family.
   
   0.743
Ppro_1605
KEGG: gme:Gmet_2429 anti-sigma-factor antagonist (STAS) domain protein.
   
   0.743
Ppro_2660
Anti-sigma-factor antagonist; TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: gsu:GSU1427 anti-anti-sigma factor; Belongs to the anti-sigma-factor antagonist family.
   
   0.743
Your Current Organism:
Pelobacter propionicus
NCBI taxonomy Id: 338966
Other names: P. propionicus DSM 2379, Pelobacter propionicus DSM 2379, Pelobacter propionicus str. DSM 2379, Pelobacter propionicus strain DSM 2379
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.