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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ppro_3544PFAM: protein of unknown function DUF188; KEGG: gme:Gmet_1725 protein of unknown function DUF188; Belongs to the UPF0178 family. (173 aa)    
Predicted Functional Partners:
Ppro_3546
PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: gsu:GSU1215 transport ATP-binding protein CydD.
       0.781
Ppro_3547
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: gme:Gmet_2633 ABC transporter-related protein.
       0.781
Ppro_3545
Hypothetical protein.
       0.773
Ppro_3543
Hypothetical protein.
       0.618
Ppro_3548
PFAM: Class I peptide chain release factor; KEGG: gsu:GSU0971 peptidyl-tRNA hydrolase domain protein.
       0.564
Ppro_3549
KEGG: hch:HCH_00790 predicted phosphohydrolase (DHH superfamily).
       0.564
Ppro_3542
PFAM: protein of unknown function DUF445; KEGG: gme:Gmet_0227 protein of unknown function DUF445.
       0.502
Ppro_1377
PFAM: protein of unknown function UPF0153; KEGG: gme:Gmet_0877 hypothetical protein.
  
     0.480
Ppro_3550
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: gme:Gmet_2630 ABC transporter-related protein.
       0.401
Your Current Organism:
Pelobacter propionicus
NCBI taxonomy Id: 338966
Other names: P. propionicus DSM 2379, Pelobacter propionicus DSM 2379, Pelobacter propionicus str. DSM 2379, Pelobacter propionicus strain DSM 2379
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