Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Ppro_0729 | Ppro_3609 | Ppro_0729 | Ppro_3609 | PFAM: glutamine amidotransferase, class-II; glutamate synthase, alpha subunit domain protein; ferredoxin-dependent glutamate synthase; KEGG: gme:Gmet_0147 ferredoxin-dependent glutamate synthase. | PFAM: protein of unknown function DUF559; KEGG: gsu:GSU1369 hypothetical protein. | 0.702 |
Ppro_1272 | Ppro_3609 | Ppro_1272 | Ppro_3609 | KEGG: mca:MCA0837 hypothetical protein. | PFAM: protein of unknown function DUF559; KEGG: gsu:GSU1369 hypothetical protein. | 0.531 |
Ppro_2335 | Ppro_3609 | Ppro_2335 | Ppro_3609 | KEGG: noc:Noc_0544 hypothetical protein. | PFAM: protein of unknown function DUF559; KEGG: gsu:GSU1369 hypothetical protein. | 0.535 |
Ppro_3609 | Ppro_0729 | Ppro_3609 | Ppro_0729 | PFAM: protein of unknown function DUF559; KEGG: gsu:GSU1369 hypothetical protein. | PFAM: glutamine amidotransferase, class-II; glutamate synthase, alpha subunit domain protein; ferredoxin-dependent glutamate synthase; KEGG: gme:Gmet_0147 ferredoxin-dependent glutamate synthase. | 0.702 |
Ppro_3609 | Ppro_1272 | Ppro_3609 | Ppro_1272 | PFAM: protein of unknown function DUF559; KEGG: gsu:GSU1369 hypothetical protein. | KEGG: mca:MCA0837 hypothetical protein. | 0.531 |
Ppro_3609 | Ppro_2335 | Ppro_3609 | Ppro_2335 | PFAM: protein of unknown function DUF559; KEGG: gsu:GSU1369 hypothetical protein. | KEGG: noc:Noc_0544 hypothetical protein. | 0.535 |
Ppro_3609 | Ppro_3610 | Ppro_3609 | Ppro_3610 | PFAM: protein of unknown function DUF559; KEGG: gsu:GSU1369 hypothetical protein. | Hypothetical protein. | 0.436 |
Ppro_3609 | mutM | Ppro_3609 | Ppro_3608 | PFAM: protein of unknown function DUF559; KEGG: gsu:GSU1369 hypothetical protein. | DNA-(apurinic or apyrimidinic site) lyase / Formamidopyrimidine-DNA glycosylase; Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic/apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates. | 0.527 |
Ppro_3610 | Ppro_3609 | Ppro_3610 | Ppro_3609 | Hypothetical protein. | PFAM: protein of unknown function DUF559; KEGG: gsu:GSU1369 hypothetical protein. | 0.436 |
mutM | Ppro_3609 | Ppro_3608 | Ppro_3609 | DNA-(apurinic or apyrimidinic site) lyase / Formamidopyrimidine-DNA glycosylase; Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic/apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates. | PFAM: protein of unknown function DUF559; KEGG: gsu:GSU1369 hypothetical protein. | 0.527 |