STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rfer_0010Glutaredoxin. (121 aa)    
Predicted Functional Partners:
Rfer_2398
Transcriptional regulator BolA; Belongs to the BolA/IbaG family.
 
 
 0.922
erpA
HesB/YadR/YfhF; Required for insertion of 4Fe-4S clusters.
  
 0.549
Rfer_1859
HesB/YadR/YfhF; Belongs to the HesB/IscA family.
  
 0.549
Rfer_2179
Iron-sulfur cluster assembly protein IscA; Belongs to the HesB/IscA family.
  
 0.549
Rfer_0008
Conserved hypothetical protein.
       0.547
Rfer_0009
Integral membrane protein.
       0.547
hscB
Co-chaperone Hsc20; Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA; Belongs to the HscB family.
  
  
 0.546
Rfer_1865
Nitrogen-fixing NifU-like.
   
 
 0.521
thrS
threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase; Catalyzes the attachment of threonine to tRNA(Thr) in a two- step reaction: L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr).
   
 
 0.455
Rfer_2943
BolA-like protein; Belongs to the BolA/IbaG family.
   
 
 0.438
Your Current Organism:
Rhodoferax ferrireducens
NCBI taxonomy Id: 338969
Other names: Albidiferax ferrireducens T118, R. ferrireducens T118, Rhodoferax ferrireducens ATCC BAA-621, Rhodoferax ferrireducens DSM 15236, Rhodoferax ferrireducens T118, Rhodoferax ferrireducens str. T118, Rhodoferax ferrireducens strain T118
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.