Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Rfer_0032N-6 DNA methylase. (544 aa)    
Predicted Functional Partners:
Rfer_0030
Restriction modification system DNA specificity domain.
 
 
 0.975
Rfer_0028
Type I site-specific deoxyribonuclease, HsdR family; Subunit R is required for both nuclease and ATPase activities, but not for modification.
 
  
 0.956
Rfer_4007
Restriction endonuclease S subunits-like.
 
 
 0.939
Rfer_0033
Hypothetical protein.
  
 
 0.907
Rfer_4010
Type I site-specific deoxyribonuclease, HsdR family; Subunit R is required for both nuclease and ATPase activities, but not for modification.
 
  
 0.895
Rfer_1367
Type III restriction enzyme, res subunit.
 
  
 0.892
Rfer_1366
Putative type I site-specific restriction-modification system, S subunit.
 
 
 0.822
Rfer_1060
Restriction modification system DNA specificity domain.
 
 
 0.815
Rfer_0029
Hypothetical protein.
 
     0.700
Rfer_0031
Protein of unknown function DUF1016.
       0.628
Your Current Organism:
Rhodoferax ferrireducens
NCBI taxonomy Id: 338969
Other names: Albidiferax ferrireducens T118, R. ferrireducens T118, Rhodoferax ferrireducens ATCC BAA-621, Rhodoferax ferrireducens DSM 15236, Rhodoferax ferrireducens T118, Rhodoferax ferrireducens str. T118, Rhodoferax ferrireducens strain T118
Server load: medium (46%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.