Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Rfer_0056Putative lipoprotein. (401 aa)    
Predicted Functional Partners:
Rfer_0057
Conserved hypothetical protein.
       0.732
Rfer_1264
O-antigen polymerase.
  
     0.642
Rfer_3268
Cyanophycinase and related exopeptidases-like; Belongs to the peptidase S51 family.
  
     0.539
Rfer_2525
Conserved hypothetical protein.
  
     0.463
Rfer_0055
Metal dependent phosphohydrolase.
       0.459
Rfer_3349
Histone protein.
  
     0.457
Rfer_4134
Putative lipoprotein.
  
     0.456
Rfer_4124
Uncharacterized protein SCO1/SenC/PrrC,involved in biogenesis of respiratory and photosynthetic systems.
  
     0.421
Your Current Organism:
Rhodoferax ferrireducens
NCBI taxonomy Id: 338969
Other names: Albidiferax ferrireducens T118, R. ferrireducens T118, Rhodoferax ferrireducens ATCC BAA-621, Rhodoferax ferrireducens DSM 15236, Rhodoferax ferrireducens T118, Rhodoferax ferrireducens str. T118, Rhodoferax ferrireducens strain T118
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.