Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Rfer_0100Conserved hypothetical protein. (179 aa)    
Predicted Functional Partners:
Rfer_3029
Conserved hypothetical protein.
  
     0.696
Rfer_0101
Hypothetical protein.
 
     0.683
Rfer_2699
Alpha/beta hydrolase.
  
     0.645
Rfer_1687
Hypothetical protein.
  
     0.641
Rfer_2211
Multi-sensor signal transduction histidine kinase.
  
     0.635
Rfer_3318
RDD.
  
     0.620
Rfer_2901
Putative inner membrane transmembrane protein.
  
     0.616
Rfer_1797
Protein of unknown function DUF339.
  
     0.613
Rfer_2977
Putative transmembrane protein.
  
     0.596
Rfer_2978
Molybdopterin binding domain.
  
     0.564
Your Current Organism:
Rhodoferax ferrireducens
NCBI taxonomy Id: 338969
Other names: Albidiferax ferrireducens T118, R. ferrireducens T118, Rhodoferax ferrireducens ATCC BAA-621, Rhodoferax ferrireducens DSM 15236, Rhodoferax ferrireducens T118, Rhodoferax ferrireducens str. T118, Rhodoferax ferrireducens strain T118
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