Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Rfer_0119Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. (299 aa)    
Predicted Functional Partners:
Rfer_1639
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
    0.705
Rfer_0846
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
    0.697
Rfer_0457
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
    0.674
Rfer_0341
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
    0.619
Rfer_1907
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.598
Rfer_0118
Hypothetical protein.
       0.567
Rfer_0844
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
    0.526
Rfer_3681
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
    0.512
Rfer_2112
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
    0.496
Rfer_0131
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
    0.489
Your Current Organism:
Rhodoferax ferrireducens
NCBI taxonomy Id: 338969
Other names: Albidiferax ferrireducens T118, R. ferrireducens T118, Rhodoferax ferrireducens ATCC BAA-621, Rhodoferax ferrireducens DSM 15236, Rhodoferax ferrireducens T118, Rhodoferax ferrireducens str. T118, Rhodoferax ferrireducens strain T118
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