Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Rfer_0122Carboxylesterase; Serine hydrolase involved in the detoxification of formaldehyde. (288 aa)    
Predicted Functional Partners:
Rfer_0121
Alcohol dehydrogenase, zinc-binding; Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily.
 0.999
Rfer_3270
NADH dehydrogenase (quinone).
  
 
 0.926
Rfer_3269
Formate dehydrogenase, alpha subunit; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
    
  0.908
Rfer_3261
Twin-arginine translocation pathway signal; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
  
 
  0.904
Rfer_3258
Formate dehydrogenase gamma subunit.
     
  0.900
Rfer_3260
4Fe-4S ferredoxin, iron-sulfur binding.
     
  0.900
Rfer_3757
Conserved hypothetical protein.
  
  
 0.754
Rfer_4017
Glutathione S-transferase-like; Belongs to the GST superfamily.
  
    0.601
purU
Formyltetrahydrofolate deformylase; Catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to formate and tetrahydrofolate (FH4).
 
  
 0.566
Rfer_0120
Methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor.
       0.532
Your Current Organism:
Rhodoferax ferrireducens
NCBI taxonomy Id: 338969
Other names: Albidiferax ferrireducens T118, R. ferrireducens T118, Rhodoferax ferrireducens ATCC BAA-621, Rhodoferax ferrireducens DSM 15236, Rhodoferax ferrireducens T118, Rhodoferax ferrireducens str. T118, Rhodoferax ferrireducens strain T118
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