Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Rfer_0163Amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine. (214 aa)    
Predicted Functional Partners:
Rfer_0164
ABC transporter related.
 
 0.997
Rfer_0161
Extracellular solute-binding protein, family 3.
 0.995
Rfer_0162
Amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine.
 
  
 
0.981
Rfer_3807
Extracellular solute-binding protein, family 3; Belongs to the bacterial solute-binding protein 3 family.
 
 0.922
Rfer_0232
Extracellular solute-binding protein, family 3.
 
 0.899
Rfer_4160
Extracellular solute-binding protein, family 3; Belongs to the bacterial solute-binding protein 3 family.
 
 0.888
Rfer_0234
ABC transporter related.
 
 
 0.881
Rfer_1030
ABC transporter related.
 
 
 0.879
Rfer_0968
ABC transporter related.
 
 
 0.876
Rfer_0239
ABC transporter related.
 
 
 0.873
Your Current Organism:
Rhodoferax ferrireducens
NCBI taxonomy Id: 338969
Other names: Albidiferax ferrireducens T118, R. ferrireducens T118, Rhodoferax ferrireducens ATCC BAA-621, Rhodoferax ferrireducens DSM 15236, Rhodoferax ferrireducens T118, Rhodoferax ferrireducens str. T118, Rhodoferax ferrireducens strain T118
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