Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Rfer_0165Amidase, hydantoinase/carbamoylase. (594 aa)    
Predicted Functional Partners:
Rfer_0158
Amidase, hydantoinase/carbamoylase.
 
  
0.949
Rfer_0373
Aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
 
 0.932
Rfer_0166
Acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase.
 
   
 0.919
Rfer_0592
4-aminobutyrate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
  
 0.917
Rfer_0986
Betaine-aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
    
 0.906
Rfer_3585
Betaine-aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
    
 0.906
panC
Pantothenate synthetase; Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate. Belongs to the pantothenate synthetase family.
     
 0.904
panD
Aspartate 1-decarboxylase; Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine.
     
  0.900
Rfer_4164
Putative aspartate 1-decarboxylase; Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine; Belongs to the PanD family.
     
  0.900
Rfer_1925
AMP-dependent synthetase and ligase.
   
 
  0.803
Your Current Organism:
Rhodoferax ferrireducens
NCBI taxonomy Id: 338969
Other names: Albidiferax ferrireducens T118, R. ferrireducens T118, Rhodoferax ferrireducens ATCC BAA-621, Rhodoferax ferrireducens DSM 15236, Rhodoferax ferrireducens T118, Rhodoferax ferrireducens str. T118, Rhodoferax ferrireducens strain T118
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